J3_6GZ5_004
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6GZ5|1|A2|A|1516, 6GZ5|1|A2|G|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ5_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0965
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZ5|1|A2|U|1513
6GZ5|1|A2|G|1514
6GZ5|1|A2|A|1515
6GZ5|1|A2|A|1516
6GZ5|1|A2|C|1517
6GZ5|1|A2|U|1518
6GZ5|1|A2|A|1519
*
6GZ5|1|A2|U|1604
6GZ5|1|A2|A|1605
6GZ5|1|A2|G|1606
*
6GZ5|1|A2|C|1622
6GZ5|1|A2|G|1623
6GZ5|1|A2|A|1624
6GZ5|1|A2|A|1625
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- ribosomal protein uL2
- Chain AN
- ribosomal protein eL15
- Chain Aj
- ribosomal protein eL37
- Chain Al
- ribosomal protein eL39
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