J3_6GZ5_007

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6GZ5|1|A2|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1479

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|C|2372
6GZ5|1|A2|G|2373
6GZ5|1|A2|A|2374
6GZ5|1|A2|A|2375
6GZ5|1|A2|G|2376
6GZ5|1|A2|U|2377
6GZ5|1|A2|G|2378
*
6GZ5|1|A2|C|2784
6GZ5|1|A2|A|2785
6GZ5|1|A2|A|2786
*
6GZ5|1|A2|U|2798
6GZ5|1|A2|C|2799
6GZ5|1|A2|U|2800
6GZ5|1|A2|G|2801

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain Ag

ribosomal protein eL34