J3_6GZ5_008

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6GZ5|1|A2|U|2767, 6GZ5|1|A2|A|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2755

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|G|2381
6GZ5|1|A2|A|2382
6GZ5|1|A2|A|2383
6GZ5|1|A2|G|2384
*
6GZ5|1|A2|C|2764
6GZ5|1|A2|C|2765
6GZ5|1|A2|A|2766
6GZ5|1|A2|U|2767
6GZ5|1|A2|A|2768
6GZ5|1|A2|U|2769
6GZ5|1|A2|C|2770
*
6GZ5|1|A2|G|2779
6GZ5|1|A2|U|2780
6GZ5|1|A2|C|2781

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

ribosomal protein eL34

Chain Aj

ribosomal protein eL37

Chain Al

ribosomal protein eL39