J3_6GZ5_014

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6GZ5|1|A2|A|4426, 6GZ5|1|A2|U|4427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_014 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1425

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6GZ5|1|A2|U|4425
6GZ5|1|A2|A|4426
6GZ5|1|A2|U|4427
6GZ5|1|A2|C|4428
*
6GZ5|1|A2|G|4453
6GZ5|1|A2|U|4454
6GZ5|1|A2|U|4455
*
6GZ5|1|A2|A|4469
6GZ5|1|A2|C|4470
6GZ5|1|A2|U|4471
6GZ5|1|A2|A|4472
6GZ5|1|A2|A|4473
6GZ5|1|A2|U|4474
6GZ5|1|A2|A|4475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13

Chain AV

ribosomal protein uL14