J3_8C3A_011

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8C3A|1|1|A|2859, 8C3A|1|1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|U|2858
8C3A|1|1|A|2859
8C3A|1|1|U|2860
8C3A|1|1|C|2861
*
8C3A|1|1|G|2886
8C3A|1|1|U|2887
8C3A|1|1|U|2888
*
8C3A|1|1|A|2902
8C3A|1|1|C|2903
8C3A|1|1|U|2904
8C3A|1|1|A|2905
8C3A|1|1|A|2906
8C3A|1|1|U|2907
8C3A|1|1|A|2908

Current chains

Chain 1

25S

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3

Chain w

Ribosomal protein L13