J3_6GZ5_026

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6GZ5|1|B1|G|1274, 6GZ5|1|B1|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_026 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1708

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6GZ5|1|B1|C|1272
6GZ5|1|B1|C|1273
6GZ5|1|B1|G|1274
6GZ5|1|B1|G|1275
6GZ5|1|B1|A|1276
6GZ5|1|B1|C|1277
*
6GZ5|1|B1|G|1320
6GZ5|1|B1|G|1321
6GZ5|1|B1|G|1322
6GZ5|1|B1|U|1323
6GZ5|1|B1|G|1324
*
6GZ5|1|B1|U|1504
6GZ5|1|B1|U|1505
6GZ5|1|B1|A|1506
6GZ5|1|B1|G|1507
6GZ5|1|B1|A|1508
6GZ5|1|B1|U|1509
6GZ5|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

ribosomal protein eS10

Chain Bd

ribosomal protein uS14

Chain Bf

ribosomal protein eS31

Chain Ct

eukaryotic elongation factor 2 (eEF2)