J3_6GZ5_046

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

6GZ5|1|A4|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_046 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.2085

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6GZ5|1|A4|C|9
6GZ5|1|A4|C|10
6GZ5|1|A4|A|11
6GZ5|1|A4|U|12
6GZ5|1|A4|A|13
6GZ5|1|A4|C|14
*
6GZ5|1|A4|G|65
6GZ5|1|A4|G|66
*
6GZ5|1|A4|U|109
6GZ5|1|A4|G|110

Current chains

Chain A4

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AD

ribosomal protein uL18

Chain AI

ribosomal protein uL16

Chain AT

ribosomal protein eL21