J3_6GZQ_015

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6GZQ|1|A2|U|848, 6GZQ|1|A2|A|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_015 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.2348

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6GZQ|1|A2|C|809
6GZQ|1|A2|U|810
6GZQ|1|A2|A|811
6GZQ|1|A2|G|812
*
6GZQ|1|A2|C|834
6GZQ|1|A2|G|835
6GZQ|1|A2|A|836
6GZQ|1|A2|A|837
6GZQ|1|A2|G|838
*
6GZQ|1|A2|C|845
6GZQ|1|A2|G|846
6GZQ|1|A2|U|847
6GZQ|1|A2|U|848
6GZQ|1|A2|A|849
6GZQ|1|A2|A|850
6GZQ|1|A2|G|851

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain B2

30S ribosomal protein S2

Chain H2

30S ribosomal protein S8