J3_6GZX_005

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6GZX|1|A1|C|1655, 6GZX|1|A1|A|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZX_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2957

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6GZX|1|A1|C|1354
6GZX|1|A1|A|1355
6GZX|1|A1|A|1356
6GZX|1|A1|G|1357
*
6GZX|1|A1|C|1653
6GZX|1|A1|G|1654
6GZX|1|A1|C|1655
6GZX|1|A1|A|1656
6GZX|1|A1|A|1657
6GZX|1|A1|A|1658
6GZX|1|A1|C|1659
*
6GZX|1|A1|G|1668
6GZX|1|A1|U|1669
6GZX|1|A1|G|1670

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain c1

50S ribosomal protein L34