J3_6GZX_007

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6GZX|1|A1|A|2532, 6GZX|1|A1|U|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZX_007 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.2534

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6GZX|1|A1|C|2531
6GZX|1|A1|A|2532
6GZX|1|A1|U|2533
6GZX|1|A1|C|2534
*
6GZX|1|A1|G|2559
6GZX|1|A1|U|2560
6GZX|1|A1|U|2561
*
6GZX|1|A1|A|2575
6GZX|1|A1|U|2576
6GZX|1|A1|U|2577
6GZX|1|A1|A|2578
6GZX|1|A1|A|2579
6GZX|1|A1|A|2580
6GZX|1|A1|G|2581

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain J1

50S ribosomal protein L14