J3_6GZX_013

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCAC*GGUAAG*CGAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZX_013 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.5428

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

6GZX|1|A2|C|2803
6GZX|1|A2|C|2804
6GZX|1|A2|A|2805
6GZX|1|A2|C|2806
*
6GZX|1|A2|G|2818
6GZX|1|A2|G|2819
6GZX|1|A2|U|2820
6GZX|1|A2|A|2821
6GZX|1|A2|A|2822
6GZX|1|A2|G|2823
*
6GZX|1|A2|C|2901
6GZX|1|A2|G|2902
6GZX|1|A2|A|2903
6GZX|1|A2|G|2904
6GZX|1|A2|G|2905

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain R2

50S ribosomal protein L22