J3_6GZX_062

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6GZX|1|A1|A|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZX_062 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.3529

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6GZX|1|A1|G|1392
6GZX|1|A1|C|1393
6GZX|1|A1|G|1394
6GZX|1|A1|G|1395
6GZX|1|A1|G|1396
6GZX|1|A1|A|1397
6GZX|1|A1|C|1398
*
6GZX|1|A1|G|1429
6GZX|1|A1|G|1430
6GZX|1|A1|C|1431
6GZX|1|A1|A|1432
6GZX|1|A1|G|1433
*
6GZX|1|A1|C|1450
6GZX|1|A1|C|1451

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23

Chain c1

50S ribosomal protein L34