J3_6GZZ_021
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZZ_021 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.1834
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZZ|1|A3|U|1055
6GZZ|1|A3|G|1056
*
6GZZ|1|A3|U|1065
6GZZ|1|A3|G|1066
6GZZ|1|A3|U|1067
6GZZ|1|A3|U|1068
6GZZ|1|A3|G|1069
*
6GZZ|1|A3|C|1080
6GZZ|1|A3|G|1081
6GZZ|1|A3|C|1082
6GZZ|1|A3|A|1083
6GZZ|1|A3|A|1084
Current chains
- Chain A3
- 16S ribosomal RNA
Nearby chains
- Chain B3
- 30S ribosomal protein S2
- Chain E3
- 30S ribosomal protein S5
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