J3_6GZZ_031

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6GZZ|1|A1|G|346, 6GZZ|1|A1|G|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZZ_031 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.2831

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A1|C|322
6GZZ|1|A1|G|323
6GZZ|1|A1|A|324
6GZZ|1|A1|A|325
6GZZ|1|A1|G|326
*
6GZZ|1|A1|C|341
6GZZ|1|A1|G|342
6GZZ|1|A1|C|343
6GZZ|1|A1|C|344
6GZZ|1|A1|A|345
6GZZ|1|A1|G|346
6GZZ|1|A1|A|347
6GZZ|1|A1|G|348
6GZZ|1|A1|A|349
6GZZ|1|A1|G|350
*
6GZZ|1|A1|C|362
6GZZ|1|A1|G|363
6GZZ|1|A1|U|364
6GZZ|1|A1|A|365
6GZZ|1|A1|G|366

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain T1

50S ribosomal protein L24