J3_6H4N_006

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H4N_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0983

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.4

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6H4N|1|A|C|1298
6H4N|1|A|G|1299
6H4N|1|A|G|1300
6H4N|1|A|A|1301
6H4N|1|A|A|1302
6H4N|1|A|G|1303
*
6H4N|1|A|C|1625
6H4N|1|A|A|1626
6H4N|1|A|G|1627
*
6H4N|1|A|C|1639
6H4N|1|A|A|1640
6H4N|1|A|A|1641
6H4N|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains