J3_6H4N_030

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H4N_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0813

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6H4N|1|A|G|1424
6H4N|1|A|G|1425
6H4N|1|A|G|1426
6H4N|1|A|A|1427
6H4N|1|A|C|1428
6H4N|1|A|G|1429
*
6H4N|1|A|C|1564
6H4N|1|A|C|1565
*
6H4N|1|A|G|1568
6H4N|1|A|A|1569
6H4N|1|A|A|1570
6H4N|1|A|A|1571
6H4N|1|A|A|1572
6H4N|1|A|G|1573
6H4N|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2