3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H58_001 not in the Motif Atlas
Homologous match to J3_7RQB_001
Geometric discrepancy: 0.0831
The information below is about J3_7RQB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_65070.3
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
4

Unit IDs

6H58|1|A|G|30
6H58|1|A|C|31
*
6H58|1|A|G|474
6H58|1|A|C|475
6H58|1|A|G|476
6H58|1|A|A|477
6H58|1|A|A|478
6H58|1|A|A|479
6H58|1|A|A|480
6H58|1|A|G|481
*
6H58|1|A|C|509
6H58|1|A|C|510

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain U
50S ribosomal protein L24

Coloring options:


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