J3_6H58_014

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H58_014 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0876

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

6H58|1|AA|G|30
6H58|1|AA|C|31
*
6H58|1|AA|G|474
6H58|1|AA|C|475
6H58|1|AA|G|476
6H58|1|AA|A|477
6H58|1|AA|A|478
6H58|1|AA|A|479
6H58|1|AA|A|480
6H58|1|AA|G|481
*
6H58|1|AA|C|509
6H58|1|AA|C|510

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain QQ

50S ribosomal protein L20

Chain UU

50S ribosomal protein L24