3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6H58|1|AA|A|2518, 6H58|1|AA|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H58_024 not in the Motif Atlas
Homologous match to J3_8VTW_008
Geometric discrepancy: 0.176
The information below is about J3_8VTW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.4
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

6H58|1|AA|C|2517
6H58|1|AA|A|2518
6H58|1|AA|U|2519
6H58|1|AA|C|2520
*
6H58|1|AA|G|2545
6H58|1|AA|U|2546
6H58|1|AA|A|2547
*
6H58|1|AA|U|2561
6H58|1|AA|U|2562
6H58|1|AA|U|2563
6H58|1|AA|A|2564
6H58|1|AA|A|2565
6H58|1|AA|A|2566
6H58|1|AA|G|2567

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain DD
50S ribosomal protein L3
Chain KK
50S ribosomal protein L14

Coloring options:


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