3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
6H58|1|aa|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H58_043 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0798
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6H58|1|aa|U|672
6H58|1|aa|A|673
*
6H58|1|aa|U|717
6H58|1|aa|A|718
6H58|1|aa|C|719
6H58|1|aa|C|720
6H58|1|aa|G|721
6H58|1|aa|G|722
6H58|1|aa|U|723
6H58|1|aa|G|724
6H58|1|aa|G|725
*
6H58|1|aa|C|732
6H58|1|aa|G|733
6H58|1|aa|G|734

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain CC
50S ribosomal protein L2
Chain ff
30S ribosomal protein S6
Chain kk
30S ribosomal protein S11
Chain oo
30S ribosomal protein S15
Chain rr
30S ribosomal protein S18
Chain uu
30S ribosomal protein S21

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