J3_6H58_045
3D structure
- PDB id
- 6H58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6H58_045 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0973
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6H58|1|aa|C|936
6H58|1|aa|A|937
6H58|1|aa|A|938
6H58|1|aa|G|939
*
6H58|1|aa|C|1344
6H58|1|aa|U|1345
6H58|1|aa|A|1346
6H58|1|aa|G|1347
6H58|1|aa|U|1348
6H58|1|aa|A|1349
6H58|1|aa|A|1350
*
6H58|1|aa|U|1372
6H58|1|aa|G|1373
6H58|1|aa|A|1374
6H58|1|aa|A|1375
6H58|1|aa|U|1376
6H58|1|aa|A|1377
6H58|1|aa|C|1378
6H58|1|aa|G|1379
Current chains
- Chain aa
- 16S ribosomal RNA
Nearby chains
- Chain gg
- 30S ribosomal protein S7
- Chain ii
- 30S ribosomal protein S9
- Chain vv
- Ribosome modulation factor
- Chain ww
- Transfer RNA; tRNA
- Chain yy
- 30S ribosomal protein S1
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