J3_6H58_047
3D structure
- PDB id
- 6H58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6H58|1|aa|A|975, 6H58|1|aa|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6H58_047 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0761
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6H58|1|aa|U|955
6H58|1|aa|U|956
6H58|1|aa|U|957
6H58|1|aa|A|958
6H58|1|aa|A|959
6H58|1|aa|U|960
6H58|1|aa|U|961
6H58|1|aa|C|962
*
6H58|1|aa|G|973
6H58|1|aa|A|974
6H58|1|aa|A|975
6H58|1|aa|G|976
6H58|1|aa|A|977
6H58|1|aa|A|978
6H58|1|aa|C|979
6H58|1|aa|C|980
6H58|1|aa|U|981
6H58|1|aa|U|982
6H58|1|aa|A|983
6H58|1|aa|C|984
*
6H58|1|aa|G|1221
6H58|1|aa|G|1222
6H58|1|aa|C|1223
6H58|1|aa|U|1224
6H58|1|aa|A|1225
Current chains
- Chain aa
- 16S ribosomal RNA
Nearby chains
- Chain jj
- 30S ribosomal protein S10
- Chain mm
- 30S ribosomal protein S13
- Chain nn
- 30S ribosomal protein S14
- Chain ss
- 30S ribosomal protein S19
- Chain xx
- Ribosome hibernation promoting factor
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