J3_6H58_052

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6H58|1|aa|U|1240, 6H58|1|aa|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H58_052 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1592

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6H58|1|aa|C|1237
6H58|1|aa|A|1238
6H58|1|aa|A|1239
6H58|1|aa|U|1240
6H58|1|aa|G|1241
*
6H58|1|aa|C|1296
6H58|1|aa|G|1297
6H58|1|aa|U|1298
6H58|1|aa|A|1299
6H58|1|aa|G|1300
6H58|1|aa|U|1301
6H58|1|aa|C|1302
6H58|1|aa|C|1303
*
6H58|1|aa|G|1334
6H58|1|aa|U|1335
6H58|1|aa|C|1336
6H58|1|aa|G|1337

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain gg

30S ribosomal protein S7

Chain mm

30S ribosomal protein S13