J3_6H58_059
3D structure
- PDB id
- 6H58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.9 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6H58|1|AA|U|34, 6H58|1|AA|U|448, 6H58|1|AA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6H58_059 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0933
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6H58|1|AA|C|32
6H58|1|AA|C|33
6H58|1|AA|U|34
6H58|1|AA|G|35
*
6H58|1|AA|C|445
6H58|1|AA|G|446
6H58|1|AA|A|447
6H58|1|AA|U|448
6H58|1|AA|A|449
6H58|1|AA|G|450
6H58|1|AA|U|451
6H58|1|AA|G|452
6H58|1|AA|A|453
6H58|1|AA|A|454
6H58|1|AA|C|455
6H58|1|AA|C|456
6H58|1|AA|A|457
6H58|1|AA|G|458
6H58|1|AA|U|459
6H58|1|AA|A|460
6H58|1|AA|C|461
*
6H58|1|AA|G|468
6H58|1|AA|G|469
6H58|1|AA|A|470
6H58|1|AA|A|471
6H58|1|AA|A|472
6H58|1|AA|G|473
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain 22
- 50S ribosomal protein L34
- Chain EE
- 50S ribosomal protein L4
- Chain QQ
- 50S ribosomal protein L20
- Chain TT
- 50S ribosomal protein L23
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