J3_6HA1_005

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

6HA1|1|A|A|811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_005 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.3104

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6HA1|1|A|C|744
6HA1|1|A|C|745
6HA1|1|A|A|746
6HA1|1|A|G|747
*
6HA1|1|A|C|779
6HA1|1|A|G|780
6HA1|1|A|A|781
6HA1|1|A|A|782
6HA1|1|A|C|783
*
6HA1|1|A|G|807
6HA1|1|A|A|808
6HA1|1|A|U|809
6HA1|1|A|G|810
6HA1|1|A|A|811
6HA1|1|A|G|812

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2