J3_6HA1_007

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1204

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6HA1|1|A|C|1337
6HA1|1|A|G|1338
6HA1|1|A|A|1339
6HA1|1|A|A|1340
6HA1|1|A|U|1341
6HA1|1|A|G|1342
*
6HA1|1|A|C|1670
6HA1|1|A|G|1671
6HA1|1|A|A|1672
*
6HA1|1|A|U|1684
6HA1|1|A|A|1685
6HA1|1|A|A|1686
6HA1|1|A|G|1687

Current chains

Chain A

23S ribosomal RNA

Nearby chains