J3_6HA1_008

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6HA1|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1278

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6HA1|1|A|C|1344
6HA1|1|A|U|1345
6HA1|1|A|A|1346
6HA1|1|A|A|1347
6HA1|1|A|G|1348
*
6HA1|1|A|C|1650
6HA1|1|A|G|1651
6HA1|1|A|C|1652
6HA1|1|A|A|1653
6HA1|1|A|A|1654
6HA1|1|A|A|1655
6HA1|1|A|C|1656
*
6HA1|1|A|G|1665
6HA1|1|A|U|1666
6HA1|1|A|A|1667
6HA1|1|A|G|1668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34