J3_6HA1_009

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

6HA1|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1685

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6HA1|1|A|U|1383
6HA1|1|A|C|1384
6HA1|1|A|G|1385
6HA1|1|A|G|1386
6HA1|1|A|G|1387
6HA1|1|A|A|1388
6HA1|1|A|C|1389
*
6HA1|1|A|G|1420
6HA1|1|A|A|1421
6HA1|1|A|C|1422
6HA1|1|A|A|1423
6HA1|1|A|A|1424
*
6HA1|1|A|U|1441
6HA1|1|A|A|1442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23