J3_6HA1_034

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6HA1|1|A|A|2547, 6HA1|1|A|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_034 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0934

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6HA1|1|A|C|2546
6HA1|1|A|A|2547
6HA1|1|A|U|2548
6HA1|1|A|C|2549
*
6HA1|1|A|G|2574
6HA1|1|A|U|2575
6HA1|1|A|U|2576
*
6HA1|1|A|A|2590
6HA1|1|A|U|2591
6HA1|1|A|U|2592
6HA1|1|A|A|2593
6HA1|1|A|A|2594
6HA1|1|A|A|2595
6HA1|1|A|G|2596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14