J3_6HCF_001

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6HCF|1|52|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|112
6HCF|1|52|A|113
6HCF|1|52|G|114
6HCF|1|52|C|115
6HCF|1|52|G|116
*
6HCF|1|52|C|155
6HCF|1|52|G|156
6HCF|1|52|U|157
6HCF|1|52|A|158
6HCF|1|52|C|159
6HCF|1|52|G|160
*
6HCF|1|52|C|275
6HCF|1|52|C|276
6HCF|1|52|G|277
6HCF|1|52|G|278

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain h3

uL29

Chain i3

60S ribosomal protein L36