J3_6HCF_010

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCF_010 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1877

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HCF|1|A1|A|40
6HCF|1|A1|G|41
*
6HCF|1|A1|C|481
6HCF|1|A1|G|482
6HCF|1|A1|C|483
6HCF|1|A1|A|484
6HCF|1|A1|A|485
6HCF|1|A1|A|486
6HCF|1|A1|U|487
*
6HCF|1|A1|A|512
6HCF|1|A1|G|513
6HCF|1|A1|U|514

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12

Chain k1

ATP binding cassette subfamily E member 1