J3_6HCF_017
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCF_017 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.39
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|A1|U|1340
6HCF|1|A1|C|1341
6HCF|1|A1|U|1342
6HCF|1|A1|U|1343
6HCF|1|A1|A|1344
6HCF|1|A1|G|1345
*
6HCF|1|A1|C|1384
6HCF|1|A1|G|1385
6HCF|1|A1|A|1386
6HCF|1|A1|G|1387
6HCF|1|A1|A|1388
6HCF|1|A1|C|1389
6HCF|1|A1|U|1390
*
6HCF|1|A1|A|1480
6HCF|1|A1|G|1481
6HCF|1|A1|C|1482
6HCF|1|A1|A|1483
6HCF|1|A1|A|1484
6HCF|1|A1|U|1485
6HCF|1|A1|A|1486
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain D1
- uS5
- Chain E1
- uS3
- Chain R1
- Ribosomal protein S16
- Chain S1
- eS17
- Chain V1
- uS10
- Chain e1
- uS14
Coloring options: