J3_6HCF_056
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6HCF|1|72|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCF_056 not in the Motif Atlas
- Homologous match to J3_8OI5_025
- Geometric discrepancy: 0.1573
- The information below is about J3_8OI5_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HCF|1|72|C|9
6HCF|1|72|C|10
6HCF|1|72|A|11
6HCF|1|72|U|12
6HCF|1|72|A|13
6HCF|1|72|C|14
*
6HCF|1|72|G|65
6HCF|1|72|G|66
*
6HCF|1|72|U|109
6HCF|1|72|G|110
Current chains
- Chain 72
- 5S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 60S ribosomal protein L5
- Chain I3
- 60S ribosomal protein L10
- Chain T3
- eL21
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