J3_8OI5_025

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8OI5|1|3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8OI5|1|3|C|9
8OI5|1|3|C|10
8OI5|1|3|A|11
8OI5|1|3|U|12
8OI5|1|3|A|13
8OI5|1|3|U|14
*
8OI5|1|3|A|66
8OI5|1|3|G|67
*
8OI5|1|3|U|111
8OI5|1|3|G|112

Current chains

Chain 3

5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 2

60S ribosomal protein L21-A

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10