J3_6HCJ_009

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCJ_009 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.3237

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6HCJ|1|51|C|3937
6HCJ|1|51|G|3938
6HCJ|1|51|G|3939
*
6HCJ|1|51|C|4074
6HCJ|1|51|U|4075
6HCJ|1|51|G|4076
6HCJ|1|51|A|4077
6HCJ|1|51|C|4078
*
6HCJ|1|51|G|4168
6HCJ|1|51|G|4169
6HCJ|1|51|A|4170
6HCJ|1|51|C|4171
6HCJ|1|51|A|4172
6HCJ|1|51|G|4173

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15