J3_6HCJ_023

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCJ_023 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.2051

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6HCJ|1|A2|U|1350
6HCJ|1|A2|G|1351
*
6HCJ|1|A2|U|1360
6HCJ|1|A2|G|1361
6HCJ|1|A2|U|1362
6HCJ|1|A2|C|1363
*
6HCJ|1|A2|G|1375
6HCJ|1|A2|A|1376
6HCJ|1|A2|U|1377
6HCJ|1|A2|A|1378
6HCJ|1|A2|A|1379

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain B2

uS2

Chain D2

uS5

Chain S2

eS17