J3_6HCM_010
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCM_010 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.1877
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HCM|1|A1|A|40
6HCM|1|A1|G|41
*
6HCM|1|A1|C|481
6HCM|1|A1|G|482
6HCM|1|A1|C|483
6HCM|1|A1|A|484
6HCM|1|A1|A|485
6HCM|1|A1|A|486
6HCM|1|A1|U|487
*
6HCM|1|A1|A|512
6HCM|1|A1|G|513
6HCM|1|A1|U|514
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Y1
- uS12
- Chain k1
- ATP binding cassette subfamily E member 1
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