J3_6HCM_019

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

6HCM|1|A1|U|1535, 6HCM|1|A1|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCM_019 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.2024

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6HCM|1|A1|C|1532
6HCM|1|A1|A|1533
6HCM|1|A1|C|1534
6HCM|1|A1|U|1535
6HCM|1|A1|G|1536
*
6HCM|1|A1|C|1597
6HCM|1|A1|G|1598
6HCM|1|A1|U|1599
6HCM|1|A1|G|1600
6HCM|1|A1|A|1601
6HCM|1|A1|U|1602
6HCM|1|A1|G|1603
6HCM|1|A1|G|1604
*
6HCM|1|A1|C|1635
6HCM|1|A1|G|1636
6HCM|1|A1|A|1637
6HCM|1|A1|G|1638

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain G1

Ribosomal protein S5

Chain T1

uS13

Chain U1

eS19

Chain a1

eS25