3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CACUG*CGUGAUGG*CGAG
Length
17 nucleotides
Bulged bases
6HCM|1|A1|U|1535, 6HCM|1|A1|G|1603
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HCM_019 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.2024
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6HCM|1|A1|C|1532
6HCM|1|A1|A|1533
6HCM|1|A1|C|1534
6HCM|1|A1|U|1535
6HCM|1|A1|G|1536
*
6HCM|1|A1|C|1597
6HCM|1|A1|G|1598
6HCM|1|A1|U|1599
6HCM|1|A1|G|1600
6HCM|1|A1|A|1601
6HCM|1|A1|U|1602
6HCM|1|A1|G|1603
6HCM|1|A1|G|1604
*
6HCM|1|A1|C|1635
6HCM|1|A1|G|1636
6HCM|1|A1|A|1637
6HCM|1|A1|G|1638

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain G1
Ribosomal protein S5
Chain T1
uS13
Chain U1
eS19
Chain a1
eS25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.206 s