J3_6HCQ_001

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6HCQ|1|51|C|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|112
6HCQ|1|51|A|113
6HCQ|1|51|G|114
6HCQ|1|51|C|115
6HCQ|1|51|G|116
*
6HCQ|1|51|C|155
6HCQ|1|51|G|156
6HCQ|1|51|U|157
6HCQ|1|51|A|158
6HCQ|1|51|C|159
6HCQ|1|51|G|160
*
6HCQ|1|51|C|275
6HCQ|1|51|C|276
6HCQ|1|51|G|277
6HCQ|1|51|G|278

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain h3

uL29

Chain i3

60S ribosomal protein L36