J3_6HD7_006
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 6HD7|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HD7_006 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.231
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HD7|1|1|A|828
6HD7|1|1|U|829
6HD7|1|1|A|830
6HD7|1|1|G|831
*
6HD7|1|1|C|863
6HD7|1|1|G|864
6HD7|1|1|U|865
6HD7|1|1|A|866
6HD7|1|1|G|867
*
6HD7|1|1|U|892
6HD7|1|1|C|893
6HD7|1|1|G|894
6HD7|1|1|A|895
6HD7|1|1|A|896
6HD7|1|1|U|897
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L2-A
- Chain T
- 60S ribosomal protein L19-A
- Chain i
- 60S ribosomal protein L34-A
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