J3_6HD7_008

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

6HD7|1|1|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HD7_008 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.4199

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6HD7|1|1|G|1230
6HD7|1|1|A|1231
6HD7|1|1|C|1232
*
6HD7|1|1|G|1256
6HD7|1|1|C|1257
6HD7|1|1|U|1258
6HD7|1|1|A|1259
6HD7|1|1|A|1260
6HD7|1|1|G|1261
6HD7|1|1|G|1262
*
6HD7|1|1|C|1277
6HD7|1|1|A|1278
6HD7|1|1|C|1279

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains