3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCAUAU*AG*UG
Length
10 nucleotides
Bulged bases
6HHQ|1|3|U|12
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HHQ_016 not in the Motif Atlas
Homologous match to J3_5TBW_045
Geometric discrepancy: 0.0669
The information below is about J3_5TBW_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52398.1
Basepair signature
cWW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6HHQ|1|3|C|9
6HHQ|1|3|C|10
6HHQ|1|3|A|11
6HHQ|1|3|U|12
6HHQ|1|3|A|13
6HHQ|1|3|U|14
*
6HHQ|1|3|A|66
6HHQ|1|3|G|67
*
6HHQ|1|3|U|111
6HHQ|1|3|G|112

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 2
60S ribosomal protein L21-A
Chain m
60S ribosomal protein L5
Chain r
60S ribosomal protein L10

Coloring options:


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