J3_6HHQ_038

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6HHQ|1|AR|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_038 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0565

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6HHQ|1|AR|U|1479
6HHQ|1|AR|G|1480
6HHQ|1|AR|A|1481
6HHQ|1|AR|A|1482
6HHQ|1|AR|G|1483
6HHQ|1|AR|U|1484
6HHQ|1|AR|G|1485
*
6HHQ|1|AR|C|1857
6HHQ|1|AR|A|1858
6HHQ|1|AR|A|1859
*
6HHQ|1|AR|U|1871
6HHQ|1|AR|C|1872
6HHQ|1|AR|U|1873
6HHQ|1|AR|A|1874

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DI

60S ribosomal protein L34-A