J3_6HHQ_052

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_052 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.0515

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HHQ|1|sR|C|1161
6HHQ|1|sR|C|1162
6HHQ|1|sR|A|1163
6HHQ|1|sR|G|1164
*
6HHQ|1|sR|C|1581
6HHQ|1|sR|U|1582
6HHQ|1|sR|A|1583
6HHQ|1|sR|G|1584
6HHQ|1|sR|U|1585
6HHQ|1|sR|A|1586
6HHQ|1|sR|A|1587
*
6HHQ|1|sR|U|1609
6HHQ|1|sR|G|1610
6HHQ|1|sR|A|1611
6HHQ|1|sR|U|1612
6HHQ|1|sR|U|1613
6HHQ|1|sR|A|1614
6HHQ|1|sR|C|1615
6HHQ|1|sR|G|1616

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d8

40S ribosomal protein S28-A

Chain s5

40S ribosomal protein S5