J3_6HMA_007

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6HMA|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HMA_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.2721

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6HMA|1|A|C|1342
6HMA|1|A|U|1343
6HMA|1|A|A|1344
6HMA|1|A|A|1345
6HMA|1|A|G|1346
*
6HMA|1|A|C|1649
6HMA|1|A|G|1650
6HMA|1|A|C|1651
6HMA|1|A|A|1652
6HMA|1|A|A|1653
6HMA|1|A|A|1654
6HMA|1|A|C|1655
*
6HMA|1|A|G|1664
6HMA|1|A|U|1665
6HMA|1|A|A|1666
6HMA|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34