J3_6HMA_011

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6HMA|1|A|A|2545, 6HMA|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HMA_011 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.106

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6HMA|1|A|C|2544
6HMA|1|A|A|2545
6HMA|1|A|U|2546
6HMA|1|A|C|2547
*
6HMA|1|A|G|2572
6HMA|1|A|U|2573
6HMA|1|A|U|2574
*
6HMA|1|A|A|2588
6HMA|1|A|U|2589
6HMA|1|A|U|2590
6HMA|1|A|A|2591
6HMA|1|A|A|2592
6HMA|1|A|A|2593
6HMA|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L14