J3_6HMA_018

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HMA_018 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0886

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HMA|1|A|G|1468
6HMA|1|A|G|1469
6HMA|1|A|G|1470
6HMA|1|A|A|1471
6HMA|1|A|C|1472
6HMA|1|A|G|1473
*
6HMA|1|A|C|1611
6HMA|1|A|C|1612
*
6HMA|1|A|G|1615
6HMA|1|A|A|1616
6HMA|1|A|A|1617
6HMA|1|A|A|1618
6HMA|1|A|A|1619
6HMA|1|A|G|1620
6HMA|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2