J3_6HRM_006
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6HRM|1|1|A|975, 6HRM|1|1|G|976, 6HRM|1|1|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_006 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.084
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|U|955
6HRM|1|1|U|956
6HRM|1|1|U|957
6HRM|1|1|A|958
6HRM|1|1|A|959
6HRM|1|1|U|960
6HRM|1|1|U|961
6HRM|1|1|C|962
*
6HRM|1|1|G|973
6HRM|1|1|A|974
6HRM|1|1|A|975
6HRM|1|1|G|976
6HRM|1|1|A|977
6HRM|1|1|A|978
6HRM|1|1|C|979
6HRM|1|1|C|980
6HRM|1|1|U|981
6HRM|1|1|U|982
6HRM|1|1|A|983
6HRM|1|1|C|984
*
6HRM|1|1|G|1221
6HRM|1|1|G|1222
6HRM|1|1|C|1223
6HRM|1|1|U|1224
6HRM|1|1|A|1225
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14
- Chain x
- 30S ribosomal protein S19
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