J3_6HRM_013
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AAUGAAC*GAAC*GUUGAU
- Length
- 17 nucleotides
- Bulged bases
- 6HRM|1|1|U|4339, 6HRM|1|1|A|4341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_013 not in the Motif Atlas
- Geometric match to J3_5J7L_048
- Geometric discrepancy: 0.1527
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HRM|1|1|A|1480
6HRM|1|1|A|1481
6HRM|1|1|U|1482
6HRM|1|1|G|1483
6HRM|1|1|A|1484
6HRM|1|1|A|1485
6HRM|1|1|C|1486
*
6HRM|1|1|G|4318
6HRM|1|1|A|4319
6HRM|1|1|A|4320
6HRM|1|1|C|4321
*
6HRM|1|1|G|4337
6HRM|1|1|U|4338
6HRM|1|1|U|4339
6HRM|1|1|G|4340
6HRM|1|1|A|4341
6HRM|1|1|U|4342
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: