J3_6HRM_015

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HRM_015 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0793

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6HRM|1|1|G|1536
6HRM|1|1|C|1537
*
6HRM|1|1|G|1980
6HRM|1|1|C|1981
6HRM|1|1|G|1982
6HRM|1|1|A|1983
6HRM|1|1|A|1984
6HRM|1|1|A|1985
6HRM|1|1|A|1986
6HRM|1|1|G|1987
*
6HRM|1|1|C|2015
6HRM|1|1|C|2016

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24